As above - I've never regretted running an extra cable, but I have regretted not running an extra cable when I've had to mount some ugly mini switch somewhere to give me an extra port !
Patchbays give you a lot of flexibility, @IanR mentioned POE, but you can also patch telephone, video, etc that you may not want to terminate in a switch. For example, the CT clamp for our solar diverter runs from the distribution board, through our patchbay, and out to the device, not going through the switch