Sometimes, particularly with old properties, trades build-in a margin to cover the stuff they can't see until they start. Tbh, I'd find it reassuring to see that your roofer has done what he sees necessary to do a proper job, which is what it looks like from the external photos. As above, I'd say don't worry about it unless someone else does, but is there perhaps a warranty on the roofing job that you can offer up if it's queried?