I have often had to reduce some wall heights or taken down sections built with wrong DPC. You should be able to reuse the Marmox, which is good considering the price! Ground bearing slab is nicer in the winter as you don't have freezing air circulating underneath.
So is it MOT, gas membrane, concrete, insulation then screed or are they in a different order? Either way I can't see too many issues that can't be worked around.