Just done 9x Fakros and had ‘input’ as to how / when they went in.
22mm fibre sarking board over 300mm posi joist roof with blown in cellulose.
Breather membrane sat directly on the sarking, then 50x25mm vertical rising counter batten, then 50x25mm roof battens laid horizontally for concrete tiles.
Zero issues.
Manufacturers installation guidelines trump everybody else, including the BCO!
The membrane should have been flat on the sarking afaic.
You need to get the roofer to expose the heads of these openings, and check how / where water is getting in. If the membrane has this droop then these are just going to become natural gutters, which collect and pool water at the top of any openings / solar PV trays.
Poor suggestion from Potton here I’m sorry, but they’ll just blame your roofer.