So... Had the conversation with my SE and after some discussion we settled on a standard cut control joint at these locations. The dowel joint was mainly specified to potentially placate the over zealous requirements of warranty providers that the SE has recently come up against in recent jobs. The SE has no issue with standard cut joints as there is minimal potential of differential settlement. He mentioned that contraction was the major concern, and if was ok with the cut joint opening up slightly over time, then he had no major concerns.
We have agreed to present a united front (from a risk and technical perspective) to said provider if they question the use of control joints, rather than dowelled joints.
The more I talk to him, the better I feel about this work.